species:   Rhsol
pid:       PID0614
parent:    Rhi-milR-147
paralog:   
locus:     KB317703.1:122191-122288
matures:   ['UGGGCAUUUGUAGGUUGGUCUGCA', 'CAGAAAGGCCACAUGAUGUUGC']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317703.1:122191-122288

0 out of bounds
24 alignments
14 proper strand
12 stranded perfect matches

     *********************                                              *********************     
CUUAUGUAACCUGCAGAAAGGCCACAUGAUGUUGCCAAGUCCCAUAAUCAGUGGCACUGCAGGGUGGGCAUUUGUAGGUUGGUCUGCAGAUACAUGUA
..((((((..(((((((..(((((((.((((((.((.(((.((((.....)))).)))...))...))))))))).))))..))))))).))))))..
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGCA---------- l=24 a=0 c
-------------CAGAAAGGCCACAUGAUGUUGC--------------------------------------------------------------- l=22 a=0 c*
--------------------------------------------------------------------------UAGGUUGGUCUGCAGAUAC----- l=19 a=3 ma
-------AACCUGCAGAAAGGCCACA------------------------------------------------------------------------ l=19 a=0 ma*

CUUAUGUAACCUGCAGAAAGG----------------------------------------------------------------------------- l=21 a=1 
------------------------------------------------------CACUGCAGGGUGGGCAUUUGUAG--------------------- l=23 a=1 
-----------------------------------------------------------CAGGGUGGGCAUUUGUAGGUU------------------ l=21 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGU--------------- l=19 a=2 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCa------------- l=21 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCU------------- l=21 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGC----------- l=23 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGCAG--------- l=25 a=1 
------------------------------------------------------------------GGCAUUUGUAGGUUGGUCUGCAG--------- l=23 a=1 
--------------------------------------------------------------------------UAGGUUGGUCUGCAGAUAu----- l=19 a=1 
--------------------------------------------------------------------------UAGGUUGGUCUGCAGAUAC----- l=19 a=3 (ma)

mb-01011
ax-1011001
ku-01
ss-101010111100
fn-001
